Head model

Head model generation

NaviNIBS relies on the open-source SimNIBS software to generate a head model from MRI data.

Note

NaviNIBS is currently only tested with head models generated by headreco from an older version of SimNIBS. Support for the newer charm-based segmentation is planned for a future release.

Use headreco to generate a head model from MRI data.

...>cd path/to/your/mri/data
...>headreco all sub-123 sub-123_wt-T1.nii.gz sub-123_wt-T2.nii.gz

This will generate a head model in the current directory with the name sub-123.msh, and some additional outputs in a subdirectory called m2m_sub-123. NaviNIBS will use this entire directory as input.

Head model import