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NaviNIBS documentation

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NaviNIBS documentation

Usage

Feature comparison
Workflow
Setup
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Core features
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Addons
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Data model
Troubleshooting
Citing NaviNIBS

Development

Code
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- NaviNIBS package
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  - NaviNIBS.Devices package
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  - NaviNIBS.Navigator package
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    - NaviNIBS.Navigator.GUI package
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      - NaviNIBS.Navigator.GUI.CollectionModels package
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        NaviNIBS.Navigator.GUI.CollectionModels.DigitizedLocationsTableModel module
        
        NaviNIBS.Navigator.GUI.CollectionModels.FiducialsTableModels module
        
        NaviNIBS.Navigator.GUI.CollectionModels.HeadPointsTableModel module
        
        NaviNIBS.Navigator.GUI.CollectionModels.HotkeysTableModel module
        
        NaviNIBS.Navigator.GUI.CollectionModels.SamplesTableModel module
        
        NaviNIBS.Navigator.GUI.CollectionModels.TargetsTableModel module
        
        NaviNIBS.Navigator.GUI.CollectionModels.ToolsTableModel module
      - NaviNIBS.Navigator.GUI.EditWindows package
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        NaviNIBS.Navigator.GUI.EditWindows.CoilCalibrationWindow module
        
        NaviNIBS.Navigator.GUI.EditWindows.ImportSessionWindow module
        
        NaviNIBS.Navigator.GUI.EditWindows.PointerCalibrationWindow module
        
        NaviNIBS.Navigator.GUI.EditWindows.ToolCalibrationWindow module
      - NaviNIBS.Navigator.GUI.ViewPanels package
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        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel package
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        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers package
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        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.MeshSurfaceLayer module
        
        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.OrientationsLayers module
        
        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.PlotLayersGroup module
        
        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.SampleMetadataOrientationsLayer module
        
        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingAngleErrorLayer module
        
        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingCrosshairsLayer module
        
        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingErrorLineLayer module
        
        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingPointLayer module
        
        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.NavigatePanel module
        
        NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.NavigationView module
        
        NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel package
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        NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.HotkeyTriggerSourceSettingsWidget module
        
        NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.LSLTriggerSourceSettingsWidget module
        
        NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.TriggerSourceSettingsWidget module
        
        NaviNIBS.Navigator.GUI.ViewPanels.CameraPanel module
        
        NaviNIBS.Navigator.GUI.ViewPanels.CoordinateSystemsPanel module
        
        NaviNIBS.Navigator.GUI.ViewPanels.DigitizeLocationsPanel module
        
        NaviNIBS.Navigator.GUI.ViewPanels.FiducialsPanel module
        
        NaviNIBS.Navigator.GUI.ViewPanels.HeadModelPanel module
        
        NaviNIBS.Navigator.GUI.ViewPanels.MRIPanel module
        
        NaviNIBS.Navigator.GUI.ViewPanels.MainViewPanelWithDockWidgets module
        
        NaviNIBS.Navigator.GUI.ViewPanels.ManageSessionPanel module
        
        NaviNIBS.Navigator.GUI.ViewPanels.SubjectRegistrationPanel module
        
        NaviNIBS.Navigator.GUI.ViewPanels.TargetsPanel module
        
        NaviNIBS.Navigator.GUI.ViewPanels.ToolsPanel module
      - NaviNIBS.Navigator.GUI.Widgets package
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        NaviNIBS.Navigator.GUI.Widgets.CollectionTableWidget module
        
        NaviNIBS.Navigator.GUI.Widgets.EditGridWidget module
        
        NaviNIBS.Navigator.GUI.Widgets.EditTargetWidget module
        
        NaviNIBS.Navigator.GUI.Widgets.MRIViews module
        
        NaviNIBS.Navigator.GUI.Widgets.SurfViews module
        
        NaviNIBS.Navigator.GUI.Widgets.TrackingStatusWidget module
      - NaviNIBS.Navigator.GUI.NavigatorGUI module
    - NaviNIBS.Navigator.Model package
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    - NaviNIBS.Navigator.TargetingCoordinator module
  - NaviNIBS.util package
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    - NaviNIBS.util.GUI package
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    - NaviNIBS.util.lsl package
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      - NaviNIBS.util.lsl.LSLStreamResolver module
      - NaviNIBS.util.lsl.LSLStreamSelector module
    - NaviNIBS.util.pyvista package
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      - NaviNIBS.util.pyvista.RemotePlotting package
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        NaviNIBS.util.pyvista.RemotePlotting.RemoteLayeredPlotter module
        
        NaviNIBS.util.pyvista.RemotePlotting.RemoteLayeredPlotterProxies module
        
        NaviNIBS.util.pyvista.RemotePlotting.RemotePlotter module
        
        NaviNIBS.util.pyvista.RemotePlotting.RemotePlotterProxy module
      - NaviNIBS.util.pyvista.PlotInteraction module
      - NaviNIBS.util.pyvista.dataset module
      - NaviNIBS.util.pyvista.plotting module
      - NaviNIBS.util.pyvista.ticks module
    - NaviNIBS.util.AsyncRunner module
    - NaviNIBS.util.Asyncio module
    - NaviNIBS.util.CoilOrientations module
    - NaviNIBS.util.Transforms module
    - NaviNIBS.util.ZMQAsyncioFix module
    - NaviNIBS.util.ZMQConnector module
    - NaviNIBS.util.attrs module
    - NaviNIBS.util.json module
    - NaviNIBS.util.logging module
    - NaviNIBS.util.numpy module
    - NaviNIBS.util.test_attrs module
Changelog

Links

Github
Precision Neurotherapeutics Lab

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Target planning¶

../_images/SetTargets_ImportedAndSelected.png

More details coming soon.

Creating a new target¶

Editing an existing target¶

Creating a grid of targets¶

Importing targets¶

Subject registration

Copyright © 2025, Christopher Cline

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Target planning