NaviNIBS.Navigator.Model package¶
Submodules¶
- NaviNIBS.Navigator.Model.Addons module
AddonSessionConfigAddonClassElementAddonExtraAddonAddon._addonInstallPathAddon._addonVersionAddon._MainViewPanelsAddon._NavigationViewsAddon._NavigationViewLayersAddon._ExtrasAddon._SessionAttrsAddon._sessionAttrsAddon.MainViewPanelsAddon.addonInstallPathAddon.SessionAttrsAddon.needsToInstantiateExtrasAddon.instantiateExtras()Addon.asDict()Addon.getConfigFilename()Addon.writeConfig()Addon.fromDict()
Addons
- NaviNIBS.Navigator.Model.Calculations module
- NaviNIBS.Navigator.Model.CoordinateSystems module
CoordinateSystemCoordinateSystem._descriptionCoordinateSystem._isVisibleCoordinateSystem._isAutogeneratedCoordinateSystem._sessionCoordinateSystem.descriptionCoordinateSystem.sessionCoordinateSystem.isVisibleCoordinateSystem.isAutogeneratedCoordinateSystem.transformFromWorldToThis()CoordinateSystem.transformFromThisToWorld()CoordinateSystem.asDict()
AffineTransformedCoordinateSystemAffineTransformedCoordinateSystem._transfThisToWorldAffineTransformedCoordinateSystem._transfWorldToThisAffineTransformedCoordinateSystem.transfThisToWorldAffineTransformedCoordinateSystem.transfWorldToThisAffineTransformedCoordinateSystem.clearCache()AffineTransformedCoordinateSystem.transformFromWorldToThis()AffineTransformedCoordinateSystem.transformFromThisToWorld()
NonlinearTransformedCoordinateSystemNonlinearTransformedCoordinateSystem._deformationFieldThisToWorld_filepathNonlinearTransformedCoordinateSystem._deformationFieldWorldToThis_filepathNonlinearTransformedCoordinateSystem.deformationFieldThisToWorldNonlinearTransformedCoordinateSystem.deformationFieldWorldToThisNonlinearTransformedCoordinateSystem.transfThisToWorldNonlinearTransformedCoordinateSystem.transfWorldToThisNonlinearTransformedCoordinateSystem.clearCache()NonlinearTransformedCoordinateSystem.transformFromWorldToThis()NonlinearTransformedCoordinateSystem.transformFromThisToWorld()
CoordinateSystems
- NaviNIBS.Navigator.Model.DigitizedLocations module
DigitizedLocationDigitizedLocation._plannedCoordDigitizedLocation._plannedCoordSpaceDigitizedLocation._sampledCoordDigitizedLocation._typeDigitizedLocation._colorDigitizedLocation.plannedCoordDigitizedLocation.plannedCoordSpaceDigitizedLocation.sampledCoordDigitizedLocation.typeDigitizedLocation.colorDigitizedLocation.asDict()DigitizedLocation.fromDict()
DigitizedLocations
- NaviNIBS.Navigator.Model.DockWidgetLayouts module
- NaviNIBS.Navigator.Model.GenericCollection module
GenericCollectionDictItemGenericCollectionGenericCollection.sigItemsAboutToChangeGenericCollection.sigItemsChangedGenericCollection.sigItemKeyAboutToChangeGenericCollection.sigItemKeyChangedGenericCollection.addItem()GenericCollection.deleteItem()GenericCollection.deleteItems()GenericCollection.setItem()GenericCollection.setItems()GenericCollection.setAttribForItems()GenericCollection.keys()GenericCollection.items()GenericCollection.get()GenericCollection.values()GenericCollection.merge()GenericCollection.asList()GenericCollection.fromList()
- NaviNIBS.Navigator.Model.HeadModel module
HeadModelHeadModel._filepathHeadModel.sigFilepathChangedHeadModel.sigDataChangedHeadModel.skinSurfPathHeadModel.csfSurfPathHeadModel.gmSurfPathHeadModel.loadCache()HeadModel.clearCache()HeadModel.filepathHeadModel.isSetHeadModel.surfKeysHeadModel.gmSurfHeadModel.gmSimpleSurfHeadModel.csfSurfHeadModel.skinSurfHeadModel.skinSimpleSurfHeadModel.eegPositionsHeadModel.asDict()HeadModel.fromDict()HeadModel.validateFilepath()
- NaviNIBS.Navigator.Model.MRI module
MRIMRI._filepathMRI._clim2DMinMRI._clim2DMaxMRI._clim3DMinMRI._clim3DMaxMRI.sigFilepathChangedMRI.sigDataChangedMRI.sigManualClimChangedMRI.sigClimChangedMRI.loadCache()MRI.clearCache()MRI.filepathMRI.isSetMRI.loadCacheIfNeeded()MRI.dataMRI.dataAsUniformGridMRI.dataToScannerTransfMRI.scannerToDataTransfMRI.clim2DMinMRI.clim2DMaxMRI.clim2DMRI.clim3DMinMRI.clim3DMaxMRI.clim3DMRI.autoClim2DMinMRI.autoClim2DMaxMRI.autoClim3DMinMRI.autoClim3DMaxMRI.asDict()MRI.fromDict()MRI.validateFilepath()
- NaviNIBS.Navigator.Model.MiscSettings module
- NaviNIBS.Navigator.Model.Samples module
SampleSample._timestampSample._coilToMRITransfSample._targetKeySample._coilKeySample._isVisibleSample._isSelectedSample._colorSample._metadataSample.timestampSample.coilToMRITransfSample.hasTransfSample.targetKeySample.coilKeySample.isVisibleSample.isSelectedSample.colorSample.metadataSample.changingMetadata()Sample.asDict()Sample.fromDict()
SamplesgetSampleTimestampNow()
- NaviNIBS.Navigator.Model.Session module
MNIRegistrationSessionSession._filepathSession._subjectIDSession._sessionIDSession._miscSettingsSession._MRISession._headModelSession._coordinateSystemsSession._subjectRegistrationSession._targetsSession._toolsSession._samplesSession._digitizedLocationsSession._triggerSourcesSession._dockWidgetLayoutsSession._addonsSession.sigInfoChangedSession.sigDirtyKeysChangedSession.subjectIDSession.sessionIDSession.filepathSession.miscSettingsSession.MRISession.headModelSession.coordinateSystemsSession.digitizedLocationsSession.subjectRegistrationSession.targetsSession.samplesSession.toolsSession.triggerSourcesSession.dockWidgetLayoutsSession.addonsSession.compressedFileIsDirtySession.unpackedSessionDirSession.beautifierSession.flagKeyAsDirty()Session.dirtyKeysSession.saveToUnpackedDir()Session.saveToFile()Session.mergeFromFile()Session.createNew()Session.loadFromFile()Session.loadFromFolder()Session.loadFromUnpackedDir()Session.getTempUnpackDir()
- NaviNIBS.Navigator.Model.SubjectRegistration module
FiducialFiducialsHeadPointsHeadPoints._headPointsHeadPoints._alignmentWeightsHeadPoints.sigHeadpointsAboutToChangeHeadPoints.sigHeadpointsChangedHeadPoints.sigAttribsAboutToChangeHeadPoints.sigAttribsChangedHeadPoints.alignmentWeightsHeadPoints.append()HeadPoints.extend()HeadPoints.remove()HeadPoints.replace()HeadPoints.clear()HeadPoints.asNDArray()HeadPoints.asList()HeadPoints.fromList()
SubjectRegistrationSubjectRegistration._fiducialsSubjectRegistration._sampledHeadPointsSubjectRegistration._trackerToMRITransfSubjectRegistration._fiducialsHistorySubjectRegistration._trackerToMRITransfHistorySubjectRegistration.sigTrackerToMRITransfAboutToChangeSubjectRegistration.sigTrackerToMRITransfChangedSubjectRegistration.fiducialsSubjectRegistration.fiducialsHistorySubjectRegistration.hasMinimumPlannedFiducialsSubjectRegistration.hasMinimumSampledFiducialsSubjectRegistration.sampledHeadPointsSubjectRegistration.trackerToMRITransfSubjectRegistration.trackerToMRITransfHistorySubjectRegistration.isRegisteredSubjectRegistration.approxHeadCenterSubjectRegistration.asDict()SubjectRegistration.fromDict()SubjectRegistration.getDatetimeFromTimestamp()SubjectRegistration.fiducialsEqual()
- NaviNIBS.Navigator.Model.Targets module
TargetTarget._targetCoordTarget._entryCoordTarget._angleTarget._depthOffsetTarget._coilToMRITransfTarget._isVisibleTarget._isHistoricalTarget._mayBeADependencyTarget._isSelectedTarget._colorTarget.targetCoordTarget.entryCoordTarget.angleTarget.calculatedAngleTarget.depthOffsetTarget.entryCoordPlusDepthOffsetTarget.coilToMRITransfTarget.isVisibleTarget.isHistoricalTarget.mayBeADependencyTarget.isSelectedTarget.colorTarget.sessionTarget.autosetEntryCoord()Target.asDict()Target.fromDict()
Targets
- NaviNIBS.Navigator.Model.Tools module
ToolTool._usedForTool._labelTool._trackerKeyTool._isActiveTool._doRenderToolTool._doRenderTrackerTool._doShowTrackingStateTool._romFilepathTool._trackerStlFilepathTool._toolStlFilepathTool._filepathsRelToTool._toolToTrackerTransfTool._toolStlToToolTransfTool._trackerStlToTrackerTransfTool._toolColorTool._trackerColorTool._toolOpacityTool._trackerOpacityTool._installPathTool._sessionPathTool.labelTool.labelIsSetTool.trackerKeyTool.trackerKeyIsSetTool.usedForTool.isActiveTool.doRenderToolTool.doRenderTrackerTool.doShowTrackingStateTool.romFilepathTool.toolStlFilepathTool.trackerStlFilepathTool.filepathsRelToTool.filepathsRelToKeyTool.sessionPathTool.toolToTrackerTransfTool.toolStlToToolTransfTool.trackerStlToTrackerTransfTool.trackerColorTool.toolColorTool.trackerOpacityTool.toolOpacityTool.toolToTrackerTransfHistoryTool.trackerSurfTool.toolSurfTool.initialTrackerPoseTool.initialTrackerPoseRelativeToTool.asDict()Tool.fromDict()Tool.sigKeyAboutToChangeTool.sigKeyChangedTool.sigItemAboutToChangeTool.sigItemChanged
SubjectTrackerCoilToolPointerCalibrationPlateToolPositionsServerInfoToolPositionsServerInfo._hostnameToolPositionsServerInfo._pubPortToolPositionsServerInfo._cmdPortToolPositionsServerInfo._typeToolPositionsServerInfo._doAutostartToolPositionsServerInfo._initKwargsToolPositionsServerInfo.sigInfoChangedToolPositionsServerInfo.hostnameToolPositionsServerInfo.pubPortToolPositionsServerInfo.cmdPortToolPositionsServerInfo.typeToolPositionsServerInfo.doAutostartToolPositionsServerInfo.initKwargsToolPositionsServerInfo.asDict()
Tools
- NaviNIBS.Navigator.Model.Triggering module
TriggerEventTriggerSourceLSLTriggerSourceLSLTriggerSource.typeLSLTriggerSource._streamKeyLSLTriggerSource._fallbackTriggerSourceKeyLSLTriggerSource._triggerEventsLSLTriggerSource._triggerValueIsEpochIDLSLTriggerSource._defaultActionLSLTriggerSource._minInterTriggerPeriodLSLTriggerSource.streamKeyLSLTriggerSource.fallbackTriggerSourceKeyLSLTriggerSource.triggerEventsLSLTriggerSource.triggerValueIsEpochIDLSLTriggerSource.defaultActionLSLTriggerSource.minInterTriggerPeriodLSLTriggerSource.trigger()
HotkeyHotkeysHotkeyTriggerSourceTriggerReceiverTriggerRouterTriggerSources