NaviNIBS.Navigator.Model.CoordinateSystems module¶

class NaviNIBS.Navigator.Model.CoordinateSystems.CoordinateSystem(key, description='', isVisible=True, isAutogenerated=False, session=None)[source]¶

Bases: GenericCollectionDictItem[str]

Parameters:

_key
_description
_isVisible
_isAutogenerated
_session

_description: str¶

_isVisible: bool¶

_isAutogenerated: bool¶

_session: tp.Optional[Session]¶

property description¶

property session¶

property isVisible¶

property isAutogenerated¶

transformFromWorldToThis(coords)[source]¶

Return type:: ndarray

transformFromThisToWorld(coords)[source]¶

Return type:: ndarray

asDict()[source]¶

class NaviNIBS.Navigator.Model.CoordinateSystems.AffineTransformedCoordinateSystem(*, key, description='', isVisible=True, isAutogenerated=False, session=None, transfThisToWorld=None, transfWorldToThis=None)[source]¶

Bases: CoordinateSystem

Parameters:

_key
_description
_isVisible
_isAutogenerated
_session
_transfThisToWorld
_transfWorldToThis

_transfThisToWorld: tp.Optional[np.ndarray]¶

_transfWorldToThis: tp.Optional[np.ndarray]¶

property transfThisToWorld¶

property transfWorldToThis¶

clearCache()[source]¶

transformFromWorldToThis(coords)[source]¶

Return type:: ndarray

transformFromThisToWorld(coords)[source]¶

Return type:: ndarray

class NaviNIBS.Navigator.Model.CoordinateSystems.NonlinearTransformedCoordinateSystem(*, key, description='', isVisible=True, isAutogenerated=False, session=None, deformationFieldThisToWorld_filepath=None, deformationFieldWorldToThis_filepath=None)[source]¶

Bases: CoordinateSystem

Parameters:

_key
_description
_isVisible
_isAutogenerated
_session
_deformationFieldThisToWorld_filepath
_deformationFieldWorldToThis_filepath

_deformationFieldThisToWorld_filepath: str¶

_deformationFieldWorldToThis_filepath: str¶

property deformationFieldThisToWorld¶

property deformationFieldWorldToThis¶

property transfThisToWorld¶

property transfWorldToThis¶

clearCache()[source]¶

transformFromWorldToThis(coords)[source]¶

Return type:: ndarray

transformFromThisToWorld(coords)[source]¶

Return type:: ndarray

class NaviNIBS.Navigator.Model.CoordinateSystems.CoordinateSystems(items=NOTHING, session=None)[source]¶

Bases: GenericCollection[str, CoordinateSystem]

Parameters:

_items
_session

_session: tp.Optional[Session]¶

property session¶

autogenerateCoordinateSystems()[source]¶

asList()[source]¶

Return type:: list[dict[str, Any]]

classmethod fromList(coordSysList)[source]¶

Return type:: CoordinateSystems